BioX::Workflow::Rules

Check rules, select rules, match against rules. Its all about the rules.

Variables

select_rules

Select a subsection of rules

match_rules

Select a subsection of rules by regexp

number_rules

    Instead of
    outdir/
        rule1
        rule2

    outdir/
        001-rule1
        002-rule2

counter_rules

Keep track of the number of our rules. Only used when --number_rules enabled

override_process

local: - override_process: 1

Subroutines

check_rules

If we have select_rules or match_rule only process those rules and skip all others