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Documentation

clone job directory
clusterscript to run interpro scans
show your muscles on the cluster.

Modules

Distribute (biological) analyses on the local SGE grid
Provides an interface to load index classes.
dummy index for testing purposes
Creates an index from a list of files
Provides an interface to load iterator classes.
Iterate through two indices by combining all elements from the first with the second index.
iterate consecutively through an index
Basic role for all indices
iterator role/base class
Utility functions for Bio::Grid::Run::SGE
basic blast utitlity functions for cluster-wide operations
Run the cluster script

Provides

in lib/Bio/Grid/Run/SGE/Index/General.pm
in lib/Bio/Grid/Run/SGE/Index/List.pm
in lib/Bio/Grid/Run/SGE/Index/Range.pm
in lib/Bio/Grid/Run/SGE/Iterator/AllvsAllNoRep.pm
in lib/Bio/Grid/Run/SGE/Iterator/AvsB.pm
in lib/Bio/Grid/Run/SGE/Iterator/Dummy.pm
in lib/Bio/Grid/Run/SGE/Iterator/List.pm
in lib/Bio/Grid/Run/SGE/Iterator/None.pm
in lib/Bio/Grid/Run/SGE/Log/Analysis.pm
in lib/Bio/Grid/Run/SGE/Log/Worker.pm
in lib/Bio/Grid/Run/SGE/Master.pm
in lib/Bio/Grid/Run/SGE/Util/ExampleEnvironment.pm
in misc/Mtest.pm