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NAME

fromgff3

USAGE

    Usage: recs fromgff3 <args> [<files>]
       Each line of input (or lines of <files>) is parsed as a GFF3 (General Feature
       Format version 3) formatted record to produce a recs output record.
    
       The output records will contain the following fields:
    
          seq_id source type start end score strand phase attributes
    
       Additional feature attributes are parsed into the "attributes" key, which is
       a hash keyed by the attribute name. The values are arrays.
    
       Refer to the GFF3 spec for field details:
         https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md
    
    Arguments:
       --filename-key|fk <keyspec>  Add a key with the source filename (if no
                                    filename is applicable will put NONE)
    
      Help Options:
          --help  This help screen
    
    Examples:
       Parse GFF3 and filter to just mRNA features:
          recs fromgff3 hg38.gff | recs grep '{{type}} eq "mRNA"'

SEE ALSO

App::RecordStream::Bio