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query_entity_Reagent

Query the entity Reagent.

This entity represents a compound as it is used by a specific reaction. A reaction involves many compounds, and a compound can be involved in many reactions. The reagent describes the use of the compound by a specific reaction.

Example:

    query_entity_Reagent -a 

The Reagent entity has the following relationship links:

HasDefaultLocation Compartment
IsInvolvedIn Reaction
IsParticipationOf Compound

Command-Line Options

-is field,value

Limit the results to entities where the given field has the given value.

-like field,value

Limit the results to entities where the given field is LIKE (in the sql sense) the given value.

-op operator,field,value

Limit the results to entities where the given field is related to the given value based on the given operator.

The operators supported are as follows. We provide text based alternatives to the comparison operators so that extra quoting is not required to keep the command-line shell from confusing them with shell I/O redirection operators.

< or lt
> or gt
<= or le
>= or ge
=
LIKE
-a

Return all fields.

-h

Display a list of the fields available for use.

-fields field-list

Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:

stoichiometry
cofactor
compartment_index
transport_coefficient

Output Format

The standard output is a tab-delimited file containing a column for each requested field.