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Name
Documentation
Size
Last Modified
AhHMA4.acc 2.78K Feb 07, 2025
AhHMA4.ali 202.67K Feb 07, 2025
AhHMA4.bb 45 Feb 07, 2025
AhHMA4.bit 5.31K Feb 07, 2025
AhHMA4_5.idl 231 Feb 07, 2025
AhHMA4_5.lis 248 Feb 07, 2025
AhHMA4_5_col_sep.idl 237 Feb 07, 2025
AhHMA4_5_filtered.ali 3.98K Feb 07, 2025
AhHMA4_5_reordered.ali 3.98K Feb 07, 2025
AhHMA4_clustalw.ali 4.4K Feb 07, 2025
AhHMA4_clustalw.fasta 4.46K Feb 07, 2025
AhHMA4_clustalw_uni.ali 4.39K Feb 07, 2025
AhHMA4_mapper.ali 11.63K Feb 07, 2025
AhHMA4_mapper.alt 427 Feb 07, 2025
AhHMA4_mapper.idm 433 Feb 07, 2025
ali_with_qm.ali 4.4K Feb 07, 2025
ali_with_qm_temp.fasta 3.82K Feb 07, 2025
ali_with_qm_temp_gaps.fasta 4.29K Feb 07, 2025
archaea-mcr-concat-rootA.tre 20.24K Feb 07, 2025
archaea-mcr-concat-rootB.tre 20.24K Feb 07, 2025
archaea-mcr-concat.tre 20.24K Feb 07, 2025
bacteria.cls 578 Feb 07, 2025
bacteria.tax 2.93K Feb 07, 2025
bacteria.taxids 174 Feb 07, 2025
blocks-masked.ali 325.77K Feb 07, 2025
blocks.ali 541.29K Feb 07, 2025
blocks.blocks 50 Feb 07, 2025
bmge.fasta 290.65K Feb 07, 2025
bmge_loose.fasta 28.8K Feb 07, 2025
bmge_medium.fasta 18.16K Feb 07, 2025
bmge_strict.fasta 16.27K Feb 07, 2025
cbs.ali 431 Feb 07, 2025
cbs.fasta 266 Feb 07, 2025
cbs.stockholm 1.08K Feb 07, 2025
classifier-simple.idl 4.8K Feb 07, 2025
classifier-zero.yaml 248 Feb 07, 2025
classifier.yaml 752 Feb 07, 2025
collapse.nex 673 Feb 07, 2025
collapse.tre 481 Feb 07, 2025
colors-itol-euka.txt 335 Feb 07, 2025
complete.ali 631 Feb 07, 2025
complete.fasta 627 Feb 07, 2025
consense.out 8.42K Feb 07, 2025
cyano.org-idm 8.89K Feb 07, 2025
cyanos.arb 10.49K Feb 07, 2025
cyanos_taxa.tre 11.86K Feb 07, 2025
empty_seqs.ali 19 Feb 07, 2025
euka-adl.cls 489 Feb 07, 2025
fake-rootA.tre 210 Feb 07, 2025
fake-rootAB.tre 224 Feb 07, 2025
fake-rootB.tre 210 Feb 07, 2025
fake-rootC.tre 210 Feb 07, 2025
fake-rootCD.tre 218 Feb 07, 2025
fake-rootD.tre 210 Feb 07, 2025
fake-rootE.tre 210 Feb 07, 2025
fake-rootEF.tre 224 Feb 07, 2025
fake-rootF.tpl 84 Feb 07, 2025
fake-rootF.tre 210 Feb 07, 2025
fake-unroot.tpl 82 Feb 07, 2025
fake-unroot.tre 154 Feb 07, 2025
fetch-tax-baseid.idl 181 Feb 07, 2025
fetch-tax-baseid.tax 1.25K Feb 07, 2025
fetch-tax-gi-acc.idl 538 Feb 07, 2025
fetch-tax-gi-acc.tax 1.12K Feb 07, 2025
fetch-tax-gi.idl 74 Feb 07, 2025
fetch-tax-gi.tax 687 Feb 07, 2025
fetch-tax-mustid.idl 231 Feb 07, 2025
fetch-tax-mustid.tax 1.3K Feb 07, 2025
fetch-tax-name.idl 205 Feb 07, 2025
fetch-tax-name.tax 1.34K Feb 07, 2025
fetch-tax-taxid.idl 60 Feb 07, 2025
fetch-tax-taxid.tax 1.13K Feb 07, 2025
filter.fasta 14.62K Feb 07, 2025
filter_tax.idm 602 Feb 07, 2025
filter_tax_acc.idm 731 Feb 07, 2025
filters.idl 43 Feb 07, 2025
for-ppred-comp.phy 15.21K Feb 07, 2025
for-ppred-prof.phy 15.4K Feb 07, 2025
forest 8.76K Feb 07, 2025
forest-ids 17.45K Feb 07, 2025
forest.idm 1.28K Feb 07, 2025
FTSW.tpl 18.63K Feb 07, 2025
FTSW.tre 28.44K Feb 07, 2025
G12210-O-S-1-NO.data 2.91K Feb 07, 2025
G12210-O-S-1-NO.out 3.71K Feb 07, 2025
G12210-O-S-1-NO.ref-tre 756 Feb 07, 2025
G12210-O-S-1-NO.tre 756 Feb 07, 2025
gapify.ali 234 Feb 07, 2025
gapify_gap.ali 234 Feb 07, 2025
gapify_gap.fasta 230 Feb 07, 2025
gapify_X.ali 234 Feb 07, 2025
gapify_X.fasta 230 Feb 07, 2025
gb_loose.fasta 7.96K Feb 07, 2025
gb_medium.fasta 7.38K Feb 07, 2025
gb_strict.fasta 6.32K Feb 07, 2025
gb_strict.phy_phyml_tree.arb 508 Feb 07, 2025
gblocks.fasta 12.57K Feb 07, 2025
gblocks_const.ali 3.82K Feb 07, 2025
gblocks_gaps.fasta 12.57K Feb 07, 2025
gblocks_masked.ali 12.4K Feb 07, 2025
get_gtdb_taxonomy_from_gca.test 86.49K Feb 07, 2025
get_ncbi_taxonomy_from_gca.test 10.75K Feb 07, 2025
get_taxid_from_legacy_seq_id.test 19.92K Feb 07, 2025
get_taxid_from_seq_id.test 20.03K Feb 07, 2025
gi_mapper.fasta 52.78K Feb 07, 2025
gi_mapper.idm 50.23K Feb 07, 2025
GNTPAN19392.ali 2.7K Feb 07, 2025
GNTPAN19590.ali 5.52K Feb 07, 2025
GNTPAN19593.ali 3.54K Feb 07, 2025
GNTPAN19618.ali 3.8K Feb 07, 2025
GNTPAN19639.ali 2.98K Feb 07, 2025
GNTPAN19649.ali 2.44K Feb 07, 2025
HMA234-euka-bor.ali 66.16K Feb 07, 2025
HMA234-euka.ali 408.12K Feb 07, 2025
HMA234-euka.bor 317 Feb 07, 2025
HMA234-euka.una 275 Feb 07, 2025
insplit.fasta 6.15K Feb 07, 2025
leaf_4_fra_bact.list 2.24K Feb 07, 2025
lhc-prasino.splits.nex 108.75K Feb 07, 2025
life.cls 92 Feb 07, 2025
life_html.cls 109 Feb 07, 2025
lifemrch.fra 2.94K Feb 07, 2025
long-leaf-seqs.idl 992 Feb 07, 2025
long-leaf-tree.tre 11.69K Feb 07, 2025
map_coords.ali 717 Feb 07, 2025
mask.ali 40 Feb 07, 2025
misleading.idl 156.25K Feb 07, 2025
missify-miss.ali 318 Feb 07, 2025
missify.ali 318 Feb 07, 2025
missify_ref.ali 318 Feb 07, 2025
mullidae-unrooted.tpl 4.09K Feb 07, 2025
mullidae-unrooted.tre 6.35K Feb 07, 2025
mullidae-well-rooted.tre 6.34K Feb 07, 2025
neglist-out.ali 198.76K Feb 07, 2025
neglist.ali 202.67K Feb 07, 2025
neglist.idl 231 Feb 07, 2025
new_seqs.ali 128 Feb 07, 2025
nuclideal.ali 237 Feb 07, 2025
nuclideal_0.5.ali 119 Feb 07, 2025
nuclideal_0.25.ali 129 Feb 07, 2025
nuclideal_1.ali 129 Feb 07, 2025
nuclideal_2.ali 119 Feb 07, 2025
obs-ppred-freqs-glb.tsv 244.82K Feb 07, 2025
obs-ppred-freqs-reorder.tsv 97.93K Feb 07, 2025
obs-ppred-freqs.tsv 97.93K Feb 07, 2025
obs.idl 11 Feb 07, 2025
OG0000464-edit-MMETSP172-clade.txt 29.25K Feb 07, 2025
OG0000464-edit-MMETSP172-collapse.txt 3.65K Feb 07, 2025
OG0000464-edit-MMETSP172-color.txt 29.25K Feb 07, 2025
OG0000464-edit-MMETSP172-label.txt 13.17K Feb 07, 2025
OG0000464-edit-MMETSP172-range.txt 29.25K Feb 07, 2025
OG0000464-edit-MMETSP172.idm 103K Feb 07, 2025
OG0000464-edit-MMETSP172.tre 15.02K Feb 07, 2025
OG0001014.fasta 2.34K Feb 07, 2025
outsplit.fasta 6.28K Feb 07, 2025
P-rpoB-CYANO10254.idm 6.52K Feb 07, 2025
parsimony.msk 51.24K Feb 07, 2025
PBP3-clade.txt 36.2K Feb 07, 2025
PBP3-collapse.txt 6K Feb 07, 2025
PBP3-color.txt 36.2K Feb 07, 2025
PBP3-label.txt 47.1K Feb 07, 2025
PBP3-range.txt 36.2K Feb 07, 2025
PBP3.arb 30.6K Feb 07, 2025
PBP3.idl 20.33K Feb 07, 2025
PBP3.tre 31.62K Feb 07, 2025
PBP3_auto.tre 37.56K Feb 07, 2025
PBP3_auto_phylum.nex 50.09K Feb 07, 2025
PBP3_family.tre 37.23K Feb 07, 2025
PBP3_family_phylum.nex 49.76K Feb 07, 2025
PBP3_phylum_4color.nex 69.8K Feb 07, 2025
phylip-lr.phy 7.74K Feb 07, 2025
phylip-rep.phy 8.92K Feb 07, 2025
phylip.ali 7.16K Feb 07, 2025
phylip.fasta 7.14K Feb 07, 2025
phylip.p80 7.05K Feb 07, 2025
phylip.phy 8.92K Feb 07, 2025
plantae.arb 4.08K Feb 07, 2025
plantae_ali.arb 4.1K Feb 07, 2025
ppred-1.phy 15.51K Feb 07, 2025
ppred-2.phy 15.51K Feb 07, 2025
ppred-3.phy 15.51K Feb 07, 2025
ppred-4.phy 15.51K Feb 07, 2025
ppred-5.phy 15.51K Feb 07, 2025
ppred-6.phy 15.51K Feb 07, 2025
ppred-7.phy 15.51K Feb 07, 2025
ppred-8.phy 15.51K Feb 07, 2025
ppred-9.phy 15.51K Feb 07, 2025
ppred-10.phy 15.51K Feb 07, 2025
ppred-11.phy 15.51K Feb 07, 2025
ppred-12.phy 15.51K Feb 07, 2025
ppred-13.phy 15.51K Feb 07, 2025
ppred-14.phy 15.51K Feb 07, 2025
ppred-15.phy 15.51K Feb 07, 2025
ppred-16.phy 15.51K Feb 07, 2025
ppred-17.phy 15.51K Feb 07, 2025
ppred-18.phy 15.51K Feb 07, 2025
ppred-19.phy 15.51K Feb 07, 2025
ppred-20.phy 15.51K Feb 07, 2025
ppred-21.phy 15.51K Feb 07, 2025
ppred-22.phy 15.51K Feb 07, 2025
ppred-23.phy 15.51K Feb 07, 2025
ppred-24.phy 15.51K Feb 07, 2025
ppred-25.phy 15.51K Feb 07, 2025
ppred-26.phy 15.51K Feb 07, 2025
ppred-27.phy 15.51K Feb 07, 2025
ppred-28.phy 15.51K Feb 07, 2025
ppred-29.phy 15.51K Feb 07, 2025
ppred-30.phy 15.51K Feb 07, 2025
ppred-31.phy 15.51K Feb 07, 2025
ppred-32.phy 15.51K Feb 07, 2025
ppred-33.phy 15.51K Feb 07, 2025
ppred-34.phy 15.51K Feb 07, 2025
ppred-35.phy 15.51K Feb 07, 2025
ppred-36.phy 15.51K Feb 07, 2025
ppred-37.phy 15.51K Feb 07, 2025
ppred-38.phy 15.51K Feb 07, 2025
ppred-39.phy 15.51K Feb 07, 2025
ppred-40.phy 15.51K Feb 07, 2025
ppred-41.phy 15.51K Feb 07, 2025
ppred-42.phy 15.51K Feb 07, 2025
ppred-43.phy 15.51K Feb 07, 2025
ppred-44.phy 15.51K Feb 07, 2025
ppred-45.phy 15.51K Feb 07, 2025
ppred-46.phy 15.51K Feb 07, 2025
ppred-47.phy 15.51K Feb 07, 2025
ppred-48.phy 15.51K Feb 07, 2025
ppred-49.phy 15.51K Feb 07, 2025
ppred-50.phy 15.51K Feb 07, 2025
ppred-freqs-by-seq.tsv 5.64M Feb 07, 2025
primate.fas 10.76K Feb 07, 2025
primate.nex 21.87K Feb 07, 2025
primate.rates 9.05K Feb 07, 2025
protideal.ali 237 Feb 07, 2025
protideal_0.5.ali 219 Feb 07, 2025
protideal_0.25.ali 229 Feb 07, 2025
protideal_1.ali 229 Feb 07, 2025
protideal_2.ali 219 Feb 07, 2025
recode_seqs.ali 948 Feb 07, 2025
rg-supermatrix-IQTREE.rate 21.87K Feb 07, 2025
root_tree_names_rooted_ladder.tre 4.53K Feb 07, 2025
root_tree_names_rooted_ladder_hand.tre 4.52K Feb 07, 2025
root_tree_names_unrooted.tre 6.49K Feb 07, 2025
rooted-bp.grp 31 Feb 07, 2025
rooted-bp.nbs 509 Feb 07, 2025
rooted-bp.tre 129 Feb 07, 2025
rooted-pp.grp 31 Feb 07, 2025
rooted-pp.nbs 509 Feb 07, 2025
rooted-pp.tre 133 Feb 07, 2025
secure.ali 0 Feb 07, 2025
selection.idl 893 Feb 07, 2025
selection.tax 7.37K Feb 07, 2025
seqid-grp-nbs.grp 5.5K Feb 07, 2025
seqid-grp-nbs.tre 6.24K Feb 07, 2025
seqs4uc.ali 948 Feb 07, 2025
shortlist.clo.idm 25.47K Feb 07, 2025
shortlist.clo.phy_phyml_tree.txt 26.69K Feb 07, 2025
shortlist.clo.tre 39.87K Feb 07, 2025
sim.idl 11 Feb 07, 2025
simple.tre 105 Feb 07, 2025
sparse_seqs.ali 254.98K Feb 07, 2025
sparse_seqs.fasta 388.01K Feb 07, 2025
sparse_seqs_pad.ali 381.67K Feb 07, 2025
sparse_seqs_pad.fasta 388.01K Feb 07, 2025
speclist.idm 1.15K Feb 07, 2025
stash.fasta 966 Feb 07, 2025
store-una-blocks-align.blocks 34 Feb 07, 2025
store-una-ex-seq.ali 150 Feb 07, 2025
store-una.una 118 Feb 07, 2025
store_blocks.blocks 59 Feb 07, 2025
superideal.ali 403.25K Feb 07, 2025
superideal_0.1.ali 403.24K Feb 07, 2025
superideal_0.3.ali 399.23K Feb 07, 2025
superideal_0.5.ali 341.11K Feb 07, 2025
superideal_0.7.ali 277.15K Feb 07, 2025
superideal_0.9.ali 74.48K Feb 07, 2025
supermatrix-a2p.ali 134.42K Feb 07, 2025
supermatrix-bin0.ali 13.73K Feb 07, 2025
supermatrix-bin1.ali 13.73K Feb 07, 2025
supermatrix-bin2.ali 13.73K Feb 07, 2025
supermatrix-bin3.ali 13.73K Feb 07, 2025
supermatrix-bin4.ali 13.73K Feb 07, 2025
supermatrix-bin5.ali 13.73K Feb 07, 2025
supermatrix-bin6.ali 13.73K Feb 07, 2025
supermatrix-bin7.ali 13.73K Feb 07, 2025
supermatrix-bin8.ali 13.73K Feb 07, 2025
supermatrix-bin9.ali 13.71K Feb 07, 2025
supermatrix-CATG-A-sample.rate 370.88K Feb 07, 2025
supermatrix-CATG-B-sample.rate 370.8K Feb 07, 2025
supermatrix-noconstant.msk 51.24K Feb 07, 2025
supermatrix-noconstant.phy 147.63K Feb 07, 2025
supermatrix.ali 205.24K Feb 07, 2025
supermatrix.phy 263.51K Feb 07, 2025
tab_mapper_gi2taxid.idm 2.86M Feb 07, 2025
tab_mapper_mustids.idm 12.11K Feb 07, 2025
tab_mapper_mustids.tsv 14.95K Feb 07, 2025
tab_mapper_with_idm.idm 8.98K Feb 07, 2025
tab_mapper_with_idm.tsv 11.83K Feb 07, 2025
tax-fake-rootA.tre 210 Feb 07, 2025
tax-fake-rootAB.tre 224 Feb 07, 2025
tax-fake-rootB.tre 210 Feb 07, 2025
tax-fake-rootC.tre 210 Feb 07, 2025
tax-fake-rootCD.tre 218 Feb 07, 2025
tax-fake-rootD.tre 210 Feb 07, 2025
tax-fake-rootE.tre 210 Feb 07, 2025
tax-fake-rootEF.tre 224 Feb 07, 2025
tax-fake-rootF.tre 210 Feb 07, 2025
taxmask.ali 311 Feb 07, 2025
taxmask.yaml 235 Feb 07, 2025
taxmask_metazoans.fasta 124 Feb 07, 2025
taxmask_opisthokonts.fasta 284 Feb 07, 2025
temp.fasta 4.28K Feb 07, 2025
temp_degap.fasta 3.82K Feb 07, 2025
temp_degap_nowrap.fasta 3.76K Feb 07, 2025
temp_prefix.fasta 4.29K Feb 07, 2025
test-delta.rates 172.85K Feb 07, 2025
test-othr.meansiterates 293.58K Feb 07, 2025
test-pmsf-archaea.sitefreq 10.83M Feb 07, 2025
test-pmsf-chi-square.stats 537.25K Feb 07, 2025
test-pmsf-euka.sitefreq 10.83M Feb 07, 2025
test-pmsf.ali 4.36M Feb 07, 2025
test-self.meansiterates 293.56K Feb 07, 2025
test_recode_expected.ali 948 Feb 07, 2025
test_uc_expected.ali 948 Feb 07, 2025
thermus.fas 6.41K Feb 07, 2025
thermus.nex 18.7K Feb 07, 2025
thermus.rates 9.65K Feb 07, 2025
tinyseq.xml 7.71K Feb 07, 2025
tinyseq_ks0.ali 6.07K Feb 07, 2025
tinyseq_ks1.ali 6.08K Feb 07, 2025
tricky.names 2.72K Feb 07, 2025
tricky.tax 21.4K Feb 07, 2025
uc_seqs.ali 948 Feb 07, 2025
unaligned.ali 89 Feb 07, 2025
underscores.idm 157 Feb 07, 2025
uniq.ali 239 Feb 07, 2025
unrooted-bp.grp 20 Feb 07, 2025
unrooted-bp.nbs 511 Feb 07, 2025
unrooted-bp.tre 122 Feb 07, 2025
unrooted-pp.grp 20 Feb 07, 2025
unrooted-pp.nbs 511 Feb 07, 2025
unrooted-pp.tre 126 Feb 07, 2025
upsk.ali 516 Feb 07, 2025
upsk.stockholm 673 Feb 07, 2025