Bio::NEXUS::TaxUnit - Represents a taxon unit in a NEXUS file
$tu = new Bio::NEXUS::TaxUnit($name, $seq);
This module represents a taxon unit in a NEXUS file (in characters block or History block)
All feedback (bugs, feature enhancements, etc.) are greatly appreciated.
Chengzhi Liang (liangc@umbi.umd.edu) Thomas Hladish (tjhladish at yahoo)
$Revision: 1.23 $
Title : new Usage : $otu = new Bio::NEXUS::TaxUnit($name, $seq); Function: Creates a new Bio::NEXUS::TaxUnit object Returns : Bio::NEXUS::TaxUnit object Args : name and sequence of TaxUnit object
Title : clone Usage : my $newtu = $set->clone(); Function: clone an TaxUnit object Returns : TaxUnit object Args : none
Title : set_name Usage : $tu->set_name($name); Function: sets the name of OTU Returns : none Args : name
Title : get_name Usage : $tu->get_name(); Function: Returns name Returns : name Args : none
Title : set_seq Usage : $tu->set_seq($seq); Function: sets the sequence of OTU Returns : none Args : sequence
Title : get_seq Usage : $tu->get_seq(); Function: Returns sequence Returns : sequence (an array of characters or tokens) Args : none
Title : get_seq_string Usage : $taxunit->get_seq_string($tokens_flag); Function: Returns sequence Returns : sequence (a string, wherein tokens or characters are space-delimited if a true value has been passed in for $tokens) Args : boolean tokens argument (optional)
To install Bio::NEXUS, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::NEXUS
CPAN shell
perl -MCPAN -e shell install Bio::NEXUS
For more information on module installation, please visit the detailed CPAN module installation guide.