fu-rename - rename sequences
version 1.5.8
fu-cat [options] [FILE1 FILE2 FILE3...]
-p
--prefix
New sequence name (accept placehodlers), default is "{b}"
-s
--separator
Separator between prefix and sequence number
-r
--reset
Reset counter at each file
fu-rename -p '{b}' test.fa test2.fa > renamed.fa
Placeholders: {b} = File basename without extensions, and {B} = File basename with extension
{b}
{B}
This suite of tools has been superseded by SeqFu, a compiled program providing faster and safer tools for sequence analysis. This suite is maintained for the higher portability of Perl scripts under certain circumstances.
SeqFu is available at https://github.com/telatin/seqfu2, and can be installed with BioConda conda install -c bioconda seqfu
conda install -c bioconda seqfu
Telatin A, Fariselli P, Birolo G. SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files. Bioengineering 2021, 8, 59. https://doi.org/10.3390/bioengineering8050059
Andrea Telatin <andrea@telatin.com>
This software is Copyright (c) 2018-2023 by Andrea Telatin.
This is free software, licensed under:
The MIT (X11) License
To install Proch::N50, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Proch::N50
CPAN shell
perl -MCPAN -e shell install Proch::N50
For more information on module installation, please visit the detailed CPAN module installation guide.