Bio::AssemblyImprovement::PrepareForSubmission::RenameContigs - Update the names of the contigs so that the assembly can be submitted to a database like EMBL
version 1.160490
Update the names of the contigs so that the assembly can be submitted to a database like EMBL
use Bio::AssemblyImprovement::PrepareForSubmission::RenameContigs; my $obj = Bio::AssemblyImprovement::PrepareForSubmission::RenameContigs->new( input_assembly => 'contigs.fa', base_contig_name => 'ABC' )->run();
Rename the contigs
Andrew J. Page <ap13@sanger.ac.uk>
This software is Copyright (c) 2012 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
To install Bio::AssemblyImprovement, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::AssemblyImprovement
CPAN shell
perl -MCPAN -e shell install Bio::AssemblyImprovement
For more information on module installation, please visit the detailed CPAN module installation guide.