Bio::AssemblyImprovement::Scaffold::SSpace::Iterative - Iteratively run SSpace.
version 1.160490
Iteratively run SSpace.
use Bio::AssemblyImprovement::Scaffold::SSpace::Iterative; my $iterative_scaffolding = Bio::AssemblyImprovement::Scaffold::SSpace::Iterative->new( input_files => ['abc_1.fastq', 'abc_2.fastq'], input_assembly => 'contigs.fa' insert_size => 250, scaffolder_exec => '/path/to/SSPACE.pl', merge_sizes => [100,50,30,10] )->run;
Run the iterations of SSpace
Andrew J. Page <ap13@sanger.ac.uk>
This software is Copyright (c) 2012 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
To install Bio::AssemblyImprovement, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::AssemblyImprovement
CPAN shell
perl -MCPAN -e shell install Bio::AssemblyImprovement
For more information on module installation, please visit the detailed CPAN module installation guide.