Bio::LITE::Taxonomy::RDP - Lightweight and efficient RDP taxonomic manager
use Bio::LITE::Taxonomy::RDP; my $taxRDP = Bio::LITE::Taxonomy::RDP->new ( bergeyXML => "/path/to/BergeyTrainingTree.xml", ); my @tax = $taxRDP->get_taxonomy (22075); my $level = $taxRDP->get_level_from_name("Bacillaceae 1");
This module provides easy and efficient access to the RDP taxonomy with minimal dependencies and without intermediary databases.
This module is not part of the Bioperl bundle.
Bio::Taxonomy
Bio::Taxonomy::NCBI
Miguel Pignatelli
Any comments or suggestions should be addressed to emepyc@gmail.com
Copyright 2009 Miguel Pignatelli, all rights reserved.
This library is free software; you may redistribute it and/or modify it under the same terms as Perl itself.
To install Bio::LITE::Taxonomy::RDP, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::LITE::Taxonomy::RDP
CPAN shell
perl -MCPAN -e shell install Bio::LITE::Taxonomy::RDP
For more information on module installation, please visit the detailed CPAN module installation guide.