GO::Tango - Tango ANnotates GO
THIS IS ALPHA CODE; API SUBJECT TO CHANGE
Usage - $tango = GO::Tango->new({apph=>$apph}) Returns - GO::Tango Args -
Usage - $terms = $tango->xrefs_to_terms([$xref1, $xref2]) OR - $terms = $tango->xrefs_to_terms(-dbname=>"interpro", -xrefs=>["IPR00001", "IPR000002"]) OR - $terms = $tango->xrefs_to_terms(["interpro:IPR000001", "interpro:IPR000001"]); Usage - $terms = $tango->xrefs_to_terms([$xref1, $xref2]) Usage - $terms = $tango->xrefs_to_terms([$xref1, $xref2]) Returns - GO::Model::Term listref Args - GO::Model::Xref list
Usage - Returns - Args -
Usage - $h = $apph->get_seq_xrefs_stats({term=>4888}, "InterPro"); Returns - hashref Args - constr [hash], dbname [str]
STATUS: ALPHA (subject to change)
returns a hashref keyed by accession nos with the count of each accession
eg the example query above will return a hash of interpro domain ids with the total number of times that interpro domain occurs in all the sequences of all products attached to or below transmembrane receptor
Email cjm@fruitfly.berkeley.edu
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself
To install GO, copy and paste the appropriate command in to your terminal.
cpanm
cpanm GO
CPAN shell
perl -MCPAN -e shell install GO
For more information on module installation, please visit the detailed CPAN module installation guide.