GOBO::InferenceEngine::GAFInferenceEngine
An GOBO::InferenceEngine for making inferences over a GAF (Gene Association File).
In the future this will be configurable.
For now there is only one kind of GAF inference:
Given an annotation to an GOBO::TermNode F, this will generate an IC annotation to P, if it is possible to infer a F part_of P link AND the inferred annotation is not redundant with either existing annotations OR with another inference
This tool should produce *sound* inferences: that is, an annotation should only be propagated over is_a and part_of. The output file should be *minimally redundant* : the only additional annotations produced should be inferred annotations in an ontology not identical to the ontology of the original asserted annotation. A further constraint is that the inferred annotation would not be redundant with any asserted annotations within the inferred ontology.
Generated annotations would have code IC and be WITH the GO ID of the original asserted annotation.
bin/go-gaf-inference.pl
To install GOBO, copy and paste the appropriate command in to your terminal.
cpanm
cpanm GOBO
CPAN shell
perl -MCPAN -e shell install GOBO
For more information on module installation, please visit the detailed CPAN module installation guide.