• NAME
• SYNOPSIS
• DESCRIPTION
  • Methods
• LICENSE
• COPYRIGHT
• AUTHOR

NAME

Bio::HTS::Tabix::Iterator - XS module wrapping around a tabix hts_itr_t

SYNOPSIS

You shouldn't be instantiating one of these manually it needs a load of pointers. Usage would be through Bio::HTS::Tabix:

    use feature qw( say );
    use Bio::HTS::Tabix;

    my $tabix = Bio::HTS::Tabix->new( filename => "gerp_plus_plus_31July2014.gz" );

    say $tabix->header;
    my $iter = $tabix->query("1:4000005-4000009");

    while ( my $n = $iter->next ) {
        say $n;
    }

DESCRIPTION

This is returned from Bio::HTS::Tabix, the only method you need to care about is 'next'.

Don't go importing this and calling new on it if you value your sanity, it won't work.

Methods

next

Returns a string with the line from the tabix iterator

LICENSE

Licensed under the terms of the GNU AFFERO GENERAL PUBLIC LICENSE (AGPL)

COPYRIGHT

Copyright 2015 Congenica Ltd.

AUTHOR

Alex Hodgkins