• NAME
• DESCRIPTION
• SEE ALSO
• CITATION

NAME

Bio::Phylo::Parsers::Ubiometa - Parser used by Bio::Phylo::IO, no serviceable parts inside

DESCRIPTION

This module parses RDF metadata for uBio namebank records. An example of such a record is here: http://www.ubio.org/authority/metadata.php?lsid=urn:lsid:ubio.org:namebank:2481730

The parser creates a single Bio::Phylo::Taxa::Taxon object to which all metadata are attached as Bio::Phylo::NeXML::Meta objects. This taxon is embedded in a taxa block, or optionally in a Bio::Phylo::Project object if the -as_project flag was provided to the call to parse().

SEE ALSO

There is a mailing list at https://groups.google.com/forum/#!forum/bio-phylo for any user or developer questions and discussions.

Bio::Phylo::IO

The uBio metadata parser is called by the Bio::Phylo::IO object. Look there to learn more about parsing.

Bio::Phylo::Manual

Also see the manual: Bio::Phylo::Manual and http://rutgervos.blogspot.com

CITATION

If you use Bio::Phylo in published research, please cite it:

Rutger A Vos, Jason Caravas, Klaas Hartmann, Mark A Jensen and Chase Miller, 2011. Bio::Phylo - phyloinformatic analysis using Perl. BMC Bioinformatics 12:63. http://dx.doi.org/10.1186/1471-2105-12-63

                    cpanm Bio::Phylo::Parsers::Ubiometa

                    perl -MCPAN -e shell
                    install Bio::Phylo::Parsers::Ubiometa