Author image Brian Sebastian Cole

NAME

Bio::RNA::SpliceSites::Scoring::SpliceModels::me2x5 - 5' splice site data submodule for pre-mRNA splice site scoring by the maxEntScan algorithm of Gene Yeo and Chris Burge.

SYNOPSIS

#This module is not intended for direct use, instead 5'ss scoring should be called through the Bio::RNA::SpliceSites::Scoring::MaxEntScan module, which uses this data submodule for splice site scoring.

DESCRIPTION

This module contains a preparsed data structure for 5'ss scoring by the maxEntScan algorithm of Yeo and Burge.

EXPORT

None.

SEE ALSO

Bio::RNA::SpliceSites::Scoring::MaxEntScan

The data contained within this data submodule originated with the maxEntScan programs distributed by Chris Burge, PhD and Gene Yeo, PhD.

J Comput biol. 2004;11(2-3):377-94 Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals. Yeo G, Burge CB PMID: 15285897

AUTHOR

Brian Sebastian Cole, <colebr@mail.med.upenn.edu>

COPYRIGHT AND LICENSE

maxEntScan algorithm: Copyright (C) 2004 by Gene Yeo and Chris Burge

This distrubtion: Copyright (C) 2014 by Brian Sebastian Cole

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself, either Perl version 5.14.2 or, at your option, any later version of Perl 5 you may have available.

ACKNOWLEDGEMENTS

The author would like to acknowledge the support of his thesis advisor Dr. Kristen Lynch, PhD.

Thanks go to John Karr of the Philadelphia Perl Mongers for the sagacious suggestion of using data submodules to hold splice models.