Andrew Page
and 1 contributors

NAME

Bio::VertRes::Config::Recipes::BacteriaRnaSeqExpressionUsingBowtie2 - Standard snp calling pipeline for bacteria

VERSION

version 1.133090

SYNOPSIS

RNA seq expression with Bowtie2 use Bio::VertRes::Config::Recipes::BacteriaRnaSeqExpressionUsingBowtie2;

   my $obj = Bio::VertRes::Config::Recipes::BacteriaRnaSeqExpressionUsingBowtie2->new( 
     database => 'abc', 
     limits => {project => ['Study ABC']}, 
     reference => 'ABC', 
     reference_lookup_file => '/path/to/refs.index',
     );
   $obj->create;

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2013 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007