Chris Mungall


SYNOPSIS CG10833.chaos-xml > CG10833.with-macros.chaos-xml -x CG10833.chaos-xml > CG10833.expanded.chaos-xml


Converts Chaos-XML to Chado-XML

Note that there are different "flavours" of Chado-XML. This includes both macro-ified and un-macroified flavours. This script will handle both

As a first step, the chaos-xml is converted to chado-xml; this chado-xml uses some macros.

As an optional second step, the macros are expanded to their full form (this is required for input to some programs, eg apollo)

Both steps happen via the use of XSL Stylesheet Transforms



Expand all macros to full form


Create macros

You need an XSLT Processor, such as xsltproc, available as part of libxslt

1 POD Error

The following errors were encountered while parsing the POD:

Around line 82:

Unknown directive: =Head1