NAME

Bio::Gonzales::Align::IO::Stockholm - IO class for the stockholm format

SYNOPSIS

    use Bio::Gonzales::Align::IO::Stockholm;


    my $sto = Bio::Gonzales::Align::IO::Stockholm->new(
        file       => 'xyz.aln.fa',
        mode       => '>',
        wrap       => 80,
        relaxed    => undef,
        file_feats => {}
    );

    $sto->write_aln($seqs);

    $sto->close;

DESCRIPTION

OPTIONS

SUBROUTINES =head1 METHODS

SEE ALSO

AUTHOR

jw bargsten, <joachim.bargsten at wur.nl>