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all_entities_Biomass

Return all instances of the Biomass entity.

A biomass is a collection of compounds in a specific ratio and in specific compartments that are necessary for a cell to function properly. The prediction of biomasses is key to the functioning of the model.

Example:

    all_entities_Biomass -a 

would retrieve all entities of type Biomass and include all fields in the entities in the output.

The Biomass entity has the following relationship links:

IsComprisedOf BiomassCompound
IsManagedBy Model

Command-Line Options

-a

Return all fields.

-h

Display a list of the fields available for use.

-fields field-list

Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:

mod_date
name

Output Format

The standard output is a tab-delimited file. It consists of the input file with an extra column added for each requested field. Input lines that cannot be extended are written to stderr.