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all_entities_ModelCompartment

Return all instances of the ModelCompartment entity.

The Model Compartment represents a section of a cell (e.g. cell wall, cytoplasm) as it appears in a specific model.

Example:

    all_entities_ModelCompartment -a 

would retrieve all entities of type ModelCompartment and include all fields in the entities in the output.

The ModelCompartment entity has the following relationship links:

IsDivisionOf Model
IsInstanceOf Compartment
IsRealLocationOf Requirement
IsTargetOf BiomassCompound

Command-Line Options

-a

Return all fields.

-h

Display a list of the fields available for use.

-fields field-list

Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:

compartment_index
label
pH
potential

Output Format

The standard output is a tab-delimited file. It consists of the input file with an extra column added for each requested field. Input lines that cannot be extended are written to stderr.