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all_entities_Reaction

Return all instances of the Reaction entity.

A reaction is a chemical process that converts one set of compounds (substrate) to another set (products).

Example:

    all_entities_Reaction -a 

would retrieve all entities of type Reaction and include all fields in the entities in the output.

The Reaction entity has the following relationship links:

Involves Reagent
IsDisplayedOn Diagram
IsRequiredBy Requirement
IsUsedAs ReactionRule
ParticipatesIn Scenario
RunsByDefaultIn Compartment
UsesAliasForReaction Source

Command-Line Options

-a

Return all fields.

-h

Display a list of the fields available for use.

-fields field-list

Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:

mod_date
name
msid
abbr
equation
reversibility

Output Format

The standard output is a tab-delimited file. It consists of the input file with an extra column added for each requested field. Input lines that cannot be extended are written to stderr.