query_entity_Biomass

Query the entity Biomass.

A biomass is a collection of compounds in a specific ratio and in specific compartments that are necessary for a cell to function properly. The prediction of biomasses is key to the functioning of the model.

Example:

    query_entity_Biomass -a 

Related entities

The Biomass entity has the following relationship links:

IsComprisedOf BiomassCompound

IsManagedBy Model

Command-Line Options

-is field,value

Limit the results to entities where the given field has the given value.

-like field,value

Limit the results to entities where the given field is LIKE (in the sql sense) the given value.

-op operator,field,value

Limit the results to entities where the given field is related to the given value based on the given operator.

The operators supported are as follows. We provide text based alternatives to the comparison operators so that extra quoting is not required to keep the command-line shell from confusing them with shell I/O redirection operators.

< or lt

> or gt

<= or le

>= or ge

=

LIKE

-a

Return all fields.

-h

Display a list of the fields available for use.

-fields field-list

Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:

mod_date

name

Output Format

The standard output is a tab-delimited file containing a column for each requested field.