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query_entity_Compound

Query the entity Compound.

A compound is a chemical that participates in a reaction. Both ligands and reaction components are treated as compounds.

Example:

    query_entity_Compound -a 

The Compound entity has the following relationship links:

HasUsage BiomassCompound
IsPresentIn Media
IsShownOn Diagram
IsTerminusFor Scenario
ParticipatesAs Reagent
UsesAliasForCompound Source

Command-Line Options

-is field,value

Limit the results to entities where the given field has the given value.

-like field,value

Limit the results to entities where the given field is LIKE (in the sql sense) the given value.

-op operator,field,value

Limit the results to entities where the given field is related to the given value based on the given operator.

The operators supported are as follows. We provide text based alternatives to the comparison operators so that extra quoting is not required to keep the command-line shell from confusing them with shell I/O redirection operators.

< or lt
> or gt
<= or le
>= or ge
=
LIKE
-a

Return all fields.

-h

Display a list of the fields available for use.

-fields field-list

Choose a set of fields to return. Field-list is a comma-separated list of strings. The following fields are available:

label
abbr
msid
ubiquitous
mod_date
uncharged_formula
formula
mass

Output Format

The standard output is a tab-delimited file containing a column for each requested field.