align2nex.pl - translate an alignment into NEXUS format using BioPerl
align2nex.pl [options] <infile>
Output the alignment in <infile> in NEXUS format. This is dependent on BioPerl AlignIO modules. I don't know how well it will work.
The format of the input file. One of { bl2seq, clustalw, emboss, fasta, mase, mega, meme, msf, nexus, pfam, phylip, prodom, psi, selex, stockholm }.
The name of the output file. Defaults to out.nex.
Print a brief help message and exits.
Print the manual page and exits.
Print the version information and exit.
$Id: align2nex.pl,v 1.6 2006/08/24 06:41:57 thladish Exp $
Arlin Stoltzfus (stoltzfu@umbi.umd.edu)
To install Bio::NEXUS, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::NEXUS
CPAN shell
perl -MCPAN -e shell install Bio::NEXUS
For more information on module installation, please visit the detailed CPAN module installation guide.