extractUniquePeptSpectra.pl - Extracts unique peptides from a .peptSpectra.xml file
extractUniquePeptSpectra.pl [options] peptSpectra.xml files
Use extractUniquePeptSpectra.pl -h
The script extracts peptide/spectrum matches from a .peptSpectra.xml file that involve unique peptides. In case several matches involve the same peptide in the original file(s), by default the match having the highest score is selected. If there is no score stored in the file(s) or if the -random flag is used, then the selection is random.
In addition, it is possible to save all the remaining matches in a second file.
./extractUniquePeptSpectra.pl example.peptSpectra.xml > test.peptSpectra.xml