Provide a description of the package
NanoB2B-NED has been developed and tested on Linux primarily using Perl and the Bash shell.
NanoB2B-NED REQUIRES that the following software be installed. More details on how to obtain and install appear below.
--Programming Languages Perl (version 5.8.5 or better)
--CPAN modules MetaMap::DataStructures
Perl is freely available at:
http://www.perl.org
It is very likely that you will already have Perl installed if you are using a Unix/Linux based system.
Please see the MetaMap::DataStructures documentation.
If you have supervisor access, or have configured MCPAN for local install, you can install via:
perl -MCPAN -e shell > install NanoB2B-NED
If not, you can, "manually" install by downloading the *.tar.gz file, unpacking, and executing the following commands.
perl Makefile.PL PREFIX=/home/programs LIB=/home/lib make make test make install
Note that the PREFIX and LIB settings are just examples to help you create a local install, if you do not have supervisor (su) access.
You must include /home/lib in your PERL5LIB environment variable to access this module when running.
If you have the super-user access, then you can install NanoB2B-NED into system directories via : perl Makefile.PL make make install make clean
The exact location of where NanoB2B-NED will be installed depends on your system configuration. A message will be printed out after 'make install' telling your exactly where it was installed.
If you have any trouble installing and using NanoB2B-NED, please contact us:
Megan Charity: charityml at vcu.edu Bridget T. McInnes: btmcinnes at vcu.edu
To install NanoB2B::NER, copy and paste the appropriate command in to your terminal.
cpanm
cpanm NanoB2B::NER
CPAN shell
perl -MCPAN -e shell install NanoB2B::NER
For more information on module installation, please visit the detailed CPAN module installation guide.