Luis M. Rodriguez-R < lmrodriguezr at gmail dot com >
Groups loci listed in GFF version 3, and produces a CSV file with the IDs of the grouped loci (one line per group).
This script is distributed under the terms of The Artistic License. See LICENSE.txt for details.
perl polloc_group.pl arguments
perl polloc_group.pl
The arguments must be in the following order:
The configuration file (a .bme or .cfg file).
A path to the GFF file containing the loci to be grouped.
A path to the CSV file to be generated.
All the following arguments will be treated as input files. Each file is assumed to contain a genome (that can contain one or more sequence) in [multi-]fasta format.
Run perl polloc_vntrs.pl without arguments to see the help message.
perl polloc_vntrs.pl
Bio::Polloc::RuleIO
Bio::Polloc::LocusIO
Bio::Polloc::GroupCriteria
To install Bio::Polloc, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Polloc
CPAN shell
perl -MCPAN -e shell install Bio::Polloc
For more information on module installation, please visit the detailed CPAN module installation guide.