NAME

TAIR::GeneDescriptions - Automatically download gene descriptions using locus identifiers (AGI codes) or gene names.

VERSION

Version 1.00

SYNOPSIS

Automatically download gene descriptions using locus identifiers (AGI codes) or gene names. (http://www.arabidopsis.org/tools/bulk/genes/index.jsp)

        use TAIR::GeneDescriptions;
        my $TB = TAIR::GeneDescriptions->new();
        my $verbose = "1";
        my $input_file = "input_file.txt";
        my $output_file = "output_file.txt";
        my ($input_file_hn);
        
        open($input_file_hn, "<", $input_file) or die("Cannot open $input_file for reading: $!");
        while (<$input_file_hn>)
                {
                        chomp;
                        my $query = $_;
                        $TB->connect($query,$verbose);  
                }
        
        $TB->write($output_file);

SUBROUTINES/METHODS

new

Object-oriented master-hash!

connect

Parameters, do not mess with them unless you know what you are doing.

write

This subroutine handles output of the program, it writes the results into a specified file name.

AUTHOR

Haktan Suren, <hsuren at cpan.org>

BUGS

Please report any bugs or feature requests to bug-tair-genedescriptions at rt.cpan.org, or through the web interface at http://rt.cpan.org/NoAuth/ReportBug.html?Queue=TAIR-GeneDescriptions. I will be notified, and then you'll automatically be notified of progress on your bug as I make changes.

SUPPORT

You can find documentation for this module with the perldoc command.

    perldoc TAIR::GeneDescriptions

You can also look for information at:

• RT: CPAN's request tracker

  http://rt.cpan.org/NoAuth/Bugs.html?Dist=TAIR-GeneDescriptions

• AnnoCPAN: Annotated CPAN documentation

  http://annocpan.org/dist/TAIR-GeneDescriptions

• CPAN Ratings

  http://cpanratings.perl.org/d/TAIR-GeneDescriptions

• Search CPAN

  http://search.cpan.org/dist/TAIR-GeneDescriptions/

DEPENDENCIES

        LWP::UserAgent
        HTTP::Request::Common

ACKNOWLEDGEMENTS

Special thanks to LC :)

LICENSE AND COPYRIGHT

Copyright 2011 Haktan Suren.

This program is free software; you can redistribute it and/or modify it under the terms of either: the GNU General Public License as published by the Free Software Foundation; or the Artistic License.

See http://dev.perl.org/licenses/ for more information.

cpanm TAIR::GeneDescriptions

perl -MCPAN -e shell
install TAIR::GeneDescriptions