- SYSTEM REQUIREMENTS
getSemanticRelation.pl - This program returns a concepts semantic relation(s) between two semantic types
This program takes two semantic types in the abbreviation form and returns their semantic relation.
Usage: getSemanticRelation.pl [OPTIONS] [ST1] [ST2]
The semantic types in their abbreviation form. For example, the semantic type of ahnd is Body Part, Organ, or Organ Component. Its abbreviation form (which is more commonly used - at least by us - is pboc <- this is the form that you should entir.
A file containing a list of concepts or terms. The format requires two semantic types per line. For example:
st1<>st2 st3<>st4 ...
Sets the debug flag for testing
Username is required to access the umls database on MySql unless it was specified in the my.cnf file at installation
Password is required to access the umls database on MySql unless it was specified in the my.cnf file at installation
Hostname where mysql is located. DEFAULT: localhost
The socket your mysql is using. DEFAULT: /tmp/mysql.sock
Database contain UMLS DEFAULT: umls
Displays the quick summary of program options.
Displays the version information.
List of CUIs that are associated with the input term
Perl (version 5.8.5 or better) - http://www.perl.org
Bridget T. McInnes, University of Minnesota
Copyright (c) 2007-2011,
Bridget T. McInnes, University of Minnesota bthomson at cs.umn.edu Ted Pedersen, University of Minnesota Duluth tpederse at d.umn.edu Siddharth Patwardhan, University of Utah, Salt Lake City email@example.com Serguei Pakhomov, University of Minnesota Twin Cities firstname.lastname@example.org
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
You should have received a copy of the GNU General Public License along with this program; if not, write to:
The Free Software Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.