MI-TDT - Multiple Imputation for Transmission Disequilibrium Test.
MI-TDT [options] file.ped
MI-TDT is an application based on a Multiple Imputation algorithm which allows dealing with missing information in trio data (one affected child and both parents). Missing information could be understood as missing haplotypic phase or missing genotype.
Option for both algorithms:
Options for EM algorithm:
Options for IP algorithm:
This manual was written for MI-TDT version 0.1.
VJF::MITDT
To install VJF::MITDT, copy and paste the appropriate command in to your terminal.
cpanm
cpanm VJF::MITDT
CPAN shell
perl -MCPAN -e shell install VJF::MITDT
For more information on module installation, please visit the detailed CPAN module installation guide.