go-prepare-release.pl
go-prepare-release.pl -f mygo.conf
Builds a GO database from various flat file components
It will build 4 databases in order, each database subsumes the previous one. Two mysqldumps will be generated for each db
You need both go-perl and go-db-perl installed
A db containing only the ontology
required files:
$GO/ontology/*.obo $GO/ontology/GO.defs $GO/ontology/external2go/*
A CVS update will be performed to get the correct files for the release
extra files generated:
rdf-xml coderelease
A db subsuming termdb that contains the gene associations
$GO/gene-associations/*
A db subsuming assocdb that includes some sequence data
$GO/gp2protein/* ./proteomes/*SPC
The proteomes dir is automatically downloaded from EBI
ftp://ftp.ebi.ac.uk/pub/databases/SPproteomes/swissprot_files/proteomes
The same as seqdb but with the IEA associations removed
fasta rdf-xml
interactive mode
make a monthly release
will cvs check out from the 1st of the month and build a release corresponding to that date
make a daily release
1 POD Error
The following errors were encountered while parsing the POD:
You forgot a '=back' before '=head1'
To install GO, copy and paste the appropriate command in to your terminal.
cpanm
cpanm GO
CPAN shell
perl -MCPAN -e shell install GO
For more information on module installation, please visit the detailed CPAN module installation guide.