Bio::MLST::Blast::BlastN - Wrapper around NCBI BlastN
version 2.1.1706216
Wrapper around NCBI BlastN. Run NCBI blast and find the top hit.
use Bio::MLST::Blast::BlastN; my $blast_database= Bio::MLST::Blast::BlastN->new( blast_database => 'output_contigs', query_file => 'alleles/adk.tfa', word_size => 500, exec => 'blastn' ); $blast_database->top_hit();
Returns a hash containing details about the top blast result.
The attributes returned in the hash are: allele_name percentage_identity source_name source_start source_end reverse contamination
Bio::MLST::Blast::Database
Andrew J. Page <ap13@sanger.ac.uk>
This software is Copyright (c) 2012 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
To install Bio::MLST::Check, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::MLST::Check
CPAN shell
perl -MCPAN -e shell install Bio::MLST::Check
For more information on module installation, please visit the detailed CPAN module installation guide.