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Bio-MLST-Check-2.1.1706216
River stage zero No dependents
++
/ Bio::MLST::Blast::Database

NAME

Bio::MLST::Blast::Database - Wrapper around NCBIs makeblastdb command

VERSION

version 2.1.1706216

SYNOPSIS

Take in a fasta file and create a temporary blast database.

   use Bio::MLST::Blast::Database;
   
   my $blast_database= Bio::MLST::Blast::Database->new(
     fasta_file => 'contigs.fa',
     exec => 'makeblastdb'
   );
   
   $blast_database->location();

METHODS

location

Returns the path to the temporary blast database files

SEE ALSO

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2012 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007