NAME

Bio::AssemblyImprovement::Abacas::Iterative - Iteratively run abacas to order contigs

VERSION

version 1.160490

SYNOPSIS

Iteratively run abacas to order contigs.

   use Bio::AssemblyImprovement::Abacas::Iterative;
   
   my $iterative_contig_ordering = Bio::AssemblyImprovement::Abacas::Iterative->new(
     reference   => 'reference.fa'
     input_assembly => 'contigs.fa'
     abacas_exec => 'abacas.pl'
   )->run();

METHODS

run

Run abacas.

SEE ALSO

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2012 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007