NAME

Bio::AssemblyImprovement::FillGaps::GapFiller::Config - Create the config file thats used to drive GapFiller

VERSION

version 1.160490

SYNOPSIS

Create the config file thats used to drive GapFiller.

   use Bio::AssemblyImprovement::FillGaps::GapFiller::Config;

   my $config_file_obj = Bio::AssemblyImprovement::FillGaps::GapFiller::Config->new(
     input_files => ['abc_1.fastq', 'abc_2.fastq'],
     insert_size => 250,
     mapper => 'bwa'
   )->create_config_file;

METHODS

create_config_file

Create the gapfiller config file.

SEE ALSO

AUTHOR

Andrew J. Page <ap13@sanger.ac.uk>

COPYRIGHT AND LICENSE

This software is Copyright (c) 2012 by Wellcome Trust Sanger Institute.

This is free software, licensed under:

  The GNU General Public License, Version 3, June 2007