Bio::AssemblyImprovement::Util::OrderContigsByLength - Sorts a fasta file by sequence length
version 1.160490
$sort_contigs = Bio::AssemblyImprovement::Util::OrderContigsByLength->new( input_filename => 'input_file.fa' );
# get/set the output filename $sort_contigs->output_filename('my_output_file.fa');
# set rename contigs $sort_contigs->contig_basename('scaffold');
# sort contigs $sort_contigs->run();
Andrew J. Page <ap13@sanger.ac.uk>
This software is Copyright (c) 2012 by Wellcome Trust Sanger Institute.
This is free software, licensed under:
The GNU General Public License, Version 3, June 2007
To install Bio::AssemblyImprovement, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::AssemblyImprovement
CPAN shell
perl -MCPAN -e shell install Bio::AssemblyImprovement
For more information on module installation, please visit the detailed CPAN module installation guide.