NAME

get_sequence_type

SYNOPSIS

get_sequence_type - Given a Fasta file (assembly) lookup the MLST data and work out the sequence type

Given a Fasta file and a Species regex, lookup the relevant MLST data and output the sequence type to a file

path-help@sanger.ac.uk

To install Bio::MLST::Types, copy and paste the appropriate command in to your terminal.

cpanm Bio::MLST::Types

perl -MCPAN -e shell
install Bio::MLST::Types

For more information on module installation, please visit the detailed CPAN module installation guide.

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