NAME

extractUniquePeptSpectra.pl - Extracts unique peptides from a .peptSpectra.xml file

SYNOPSIS

extractUniquePeptSpectra.pl [options] peptSpectra.xml files

OPTIONS

Use extractUniquePeptSpectra.pl -h

DESCRIPTION

The script extracts peptide/spectrum matches from a .peptSpectra.xml file that involve unique peptides. In case several matches involve the same peptide in the original file(s), by default the match having the highest score is selected. If there is no score stored in the file(s) or if the -random flag is used, then the selection is random.

In addition, it is possible to save all the remaining matches in a second file.

EXAMPLE

./extractUniquePeptSpectra.pl example.peptSpectra.xml > test.peptSpectra.xml

AUTHOR

Jacques Colinge

To install InSilicoSpectro, copy and paste the appropriate command in to your terminal.

cpanm

cpanm InSilicoSpectro

CPAN shell

perl -MCPAN -e shell
install InSilicoSpectro

For more information on module installation, please visit the detailed CPAN module installation guide.

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