Copyright [2015-2018] EMBL-European Bioinformatics Institute
Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at
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Bio::DB::HTS::Tabix::Iterator - XS module wrapping around a tabix hts_itr_t
You shouldn't be instantiating one of these manually it needs a load of pointers. Usage would be through Bio::DB::HTS::Tabix:
use feature qw( say ); use Bio::DB::HTS::Tabix; my $tabix = Bio::DB::HTS::Tabix->new( filename => "gerp_plus_plus_31July2014.gz" ); say $tabix->header; my $iter = $tabix->query("1:4000005-4000009"); while ( my $n = $iter->next ) { say $n; }
This is returned from Bio::DB::HTS::Tabix, the only method you need to care about is 'next'.
Don't go importing this and calling new on it if you value your sanity, it won't work.
next
Returns a string with the line from the tabix iterator
Alex Hodgkins Rishi Nag <rishi@ebi.ac.uk>
To install Bio::DB::HTS, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::DB::HTS
CPAN shell
perl -MCPAN -e shell install Bio::DB::HTS
For more information on module installation, please visit the detailed CPAN module installation guide.