Ewan Birney

NAME

Bio::Factory::BlastResultFactory - Factory for Bio::Search::Result::BlastResult objects

SYNOPSIS

    use Bio::Factory::BlastResultFactory;

    my $result_fact = Bio::Factory::BlastResultFactory->new();

    my $result = $result_fact->create_result( %parameters );

See documentation for create_result() for information about %parameters.

DESCRIPTION

This module encapsulates code for creating Bio::Search::Result::BlastResult and Bio::Search::HSP::BlastHSP objects from traditional BLAST report data (i.e., non-XML formatted).

FEEDBACK

Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.

  bioperl-l@bioperl.org                - General discussion
  http://bio.perl.org/MailList.html    - About the mailing lists

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via email or the web:

  bioperl-bugs@bio.perl.org
  http://bio.perl.org/bioperl-bugs/

AUTHOR

Steve Chervitz <sac@bioperl.org>

See the FEEDBACK section for where to send bug reports and comments.

COPYRIGHT

Copyright (c) 2001 Steve Chervitz. All Rights Reserved.

DISCLAIMER

This software is provided "as is" without warranty of any kind.

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

create_result

 Title   : create_result
 Usage   : $result = $factory->create_result( %params );
 Function: Creates a new Bio::Search::Result::BlastResult object.
 Returns : A single Bio::Search::Result::BlastResult object
 Args    : none