Ewan Birney

NAME

Bio::LiveSeq::DNA - DNA object for LiveSeq

SYNOPSIS

  # documentation needed

DESCRIPTION

This holds the DNA sequence (or the RNA in the case of cDNA entries) and is accessed by exons, genes, transcripts... objects

AUTHOR - Joseph A.L. Insana

Email: Insana@ebi.ac.uk, jinsana@gmx.net

Address:

     EMBL Outstation, European Bioinformatics Institute
     Wellcome Trust Genome Campus, Hinxton
     Cambs. CB10 1SD, United Kingdom 

APPENDIX

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

  Title   : new
  Usage   : $dna = Bio::LiveSeq::DNA->new(-seq => "atcgaccaatggacctca",
                                          -offset => 3 );

  Function: generates a new Bio::LiveSeq::DNA
  Returns : reference to a new object of class DNA
  Errorcode -1
  Args    : a string
        AND an optional offset to create nucleotide labels (default is 1, i.e.
            starting the count of labels from "1") -> do not bother using it ->
            it could be used by alternative loaders !EMBL format
  NOTE    : strand of DNA is set to 1 by default