Bio::SearchIO::EventHandlerI - An abstract Event Handler for Search Result parsing
# do not use this object directly it is an interface # See Bio::SearchIO::SearchResultEventBuilder for an implementation
use Bio::SearchIO::SearchResultEventBuilder; my $handler = new Bio::SearchIO::SearchResultEventBuilder();
This interface describes the basic methods needed to handle Events thrown from parsing a Search Result such as FASTA, BLAST, or HMMer.
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : start_result Usage : $handler->start_result($data) Function: Begins a result event cycle Returns : none Args : Type of Result
Title : end_result Usage : $handler->end_result($data) Function: Ends a result event cycle Returns : Bio::Search::Result::ResultI object Args : none
Title : start_hsp Usage : $handler->start_hsp($data) Function: Start a HSP event cycle Returns : none Args : type of element associated hashref
Title : end_hsp Usage : $handler->end_hsp() Function: Ends a HSP event cycle Returns : Bio::Search::HSP::HSPI object Args : type of event and associated hashref
Title : start_hit Usage : $handler->start_hit() Function: Starts a Hit event cycle Returns : none Args : type of event and associated hashref
Title : end_hit Usage : $handler->end_hit() Function: Ends a Hit event cycle Returns : Bio::Search::Hit::HitI object Args : type of event and associated hashref
Title : will_handle Usage : if( $handler->will_handle($event_type) ) { ... } Function: Tests if this event builder knows how to process a specific event Returns : boolean Args : event type name
See Bio::Event::EventHandlerI for the additional SAX methods.
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.