- AUTHOR - Jason Stajich
Bio::TreeIO::newick - TreeIO implementation for parsing Newick/New Hampshire/PHYLIP format.
# do not use this module directly use Bio::TreeIO; my $treeio = new Bio::TreeIO(-format => 'newick', -file => 'tree.dnd'); my $tree = $treeio->next_tree;
This module handles parsing and writing of Newick/PHYLIP/New Hampshire format.
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
firstname.lastname@example.org - General discussion http://bioperl.org/MailList.shtml - About the mailing lists
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via email or the web:
Describe contact details here
Additional contributors names and emails here
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : next_tree Usage : my $tree = $treeio->next_tree Function: Gets the next tree in the stream Returns : Bio::Tree::TreeI Args :
Title : write_tree Usage : $treeio->write_tree($tree); Function: Write a tree out to data stream in newick/phylip format Returns : none Args : Bio::Tree::TreeI object