Bio::Factory::BlastResultFactory - Factory for Bio::Search::Result::BlastResult objects
use Bio::Factory::BlastResultFactory; my $result_fact = Bio::Factory::BlastResultFactory->new(); my $result = $result_fact->create_result( %parameters );
See documentation for create_result() for information about %parameters.
%parameters
This module encapsulates code for creating Bio::Search::Result::BlastResult and Bio::Search::HSP::BlastHSP objects from traditional BLAST report data (i.e., non-XML formatted).
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://bio.perl.org/MailList.html - About the mailing lists
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via email or the web:
bioperl-bugs@bio.perl.org http://bio.perl.org/bioperl-bugs/
Steve Chervitz <sac@bioperl.org>
See the FEEDBACK section for where to send bug reports and comments.
Copyright (c) 2001 Steve Chervitz. All Rights Reserved.
This software is provided "as is" without warranty of any kind.
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : create_result Usage : $result = $factory->create_result( %params ); Function: Creates a new Bio::Search::Result::BlastResult object. Returns : A single Bio::Search::Result::BlastResult object Args : none
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.