Bio::Annotation::Collection - Default Perl implementation of AnnotationCollectionI
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Bioperl implementation for Bio::AnnotationCollecitonI
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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : $coll = Bio::Annotation::Collection->new() Function: Makes a new Annotation::Collection object. Returns : Bio::Annotation::Collection Args : none
Title : get_all_annotation_keys Usage : $ac->get_all_annotation_keys() Function: gives back a list of annotation keys, which are simple text strings Returns : list of strings Args : none
Title : get_Annotations Usage : my @annotations = $collection->get_Annotations('key') Function: Retrieves all the Bio::AnnotationI objects for a specific key Returns : list of Bio::AnnotationI - empty if no objects stored for a key Args : string which is key for annotations
Title : get_num_of_annotations Usage : my $count = $collection->get_num_of_annotations() Function: Returns the count of all annotations stored in this collection Returns : integer Args : none
Title : add_Annotation Usage : $self->add_Annotation('reference',$object); $self->add_Annotation('disease',$object,'Bio::MyInterface::DiseaseI'); Function: Adds an annotation for a specific Returns : none Args : annotation key ('disease', 'dblink', ...) object to store (must be Bio::AnnotationI compliant) [optional] object archytype to map future storage of object of these types to
Functions put in for backward compatibility with old Bio::Annotation.pm stuff
Title : description Usage : Function: Example : Returns : Args :
Title : add_gene_name Usage : Function: Example : Returns : Args :
Title : each_gene_name Usage : Function: Example : Returns : Args :
Title : add_Reference Usage : Function: Example : Returns : Args :
Title : each_Reference Usage : Function: Example : Returns : Args :
Title : add_Comment Usage : Function: Example : Returns : Args :
Title : each_Comment Usage : Function: Example : Returns : Args :
Title : add_DBLink Usage : Function: Example : Returns : Args :
Title : each_DBLink Usage : Function: Example : Returns : Args :
Title : _typemap Usage : $obj->_typemap($newval) Function: Example : Returns : value of _typemap Args : newvalue (optional)
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.