Bio::Graphics::Glyph::segments - The "segments" glyph
See L<Bio::Graphics::Panel> and L<Bio::Graphics::Glyph>.
This glyph is used for drawing features that consist of discontinuous segments. Unlike "graded_segments" or "alignment", the segments are a uniform color and not dependent on the score of the segment.
The following options are standard among all Glyphs. See Bio::Graphics::Glyph for a full explanation.
Option Description Default ------ ----------- ------- -fgcolor Foreground color black -outlinecolor Synonym for -fgcolor -bgcolor Background color turquoise -fillcolor Synonym for -bgcolor -linewidth Line width 1 -height Height of glyph 10 -font Glyph font gdSmallFont -connector Connector type 0 (false) -connector_color Connector color black -label Whether to draw a label 0 (false) -description Whether to draw a description 0 (false) -strand_arrow Whether to indicate 0 (false) strandedness
In addition, the alignment glyph recognizes the following glyph-specific options:
Option Description Default ------ ----------- ------- -max_score Maximum value of the Calculated feature's "score" attribute -min_score Minimum value of the Calculated feature's "score" attribute
If max_score and min_score are not specified, then the glyph will calculate the local maximum and minimum scores at run time.
Please report them.
Bio::Graphics::Panel, Bio::Graphics::Track, Bio::Graphics::Glyph::anchored_arrow, Bio::Graphics::Glyph::arrow, Bio::Graphics::Glyph::box, Bio::Graphics::Glyph::primers, Bio::Graphics::Glyph::segments, Bio::Graphics::Glyph::graded_segments, Bio::Graphics::Glyph::toomany, Bio::Graphics::Glyph::transcript, Bio::Graphics::Glyph::transcript2,
Lincoln Stein <lstein@cshl.org>
Copyright (c) 2001 Cold Spring Harbor Laboratory
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.