Bio::LiveSeq::DNA - DNA object for LiveSeq
# documentation needed
This holds the DNA sequence (or the RNA in the case of cDNA entries) and is accessed by exons, genes, transcripts... objects
Email: Insana@ebi.ac.uk, jinsana@gmx.net
Address:
EMBL Outstation, European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton Cambs. CB10 1SD, United Kingdom
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : new Usage : $dna = Bio::LiveSeq::DNA->new(-seq => "atcgaccaatggacctca", -offset => 3 ); Function: generates a new Bio::LiveSeq::DNA Returns : reference to a new object of class DNA Errorcode -1 Args : a string AND an optional offset to create nucleotide labels (default is 1, i.e. starting the count of labels from "1") -> do not bother using it -> it could be used by alternative loaders !EMBL format NOTE : strand of DNA is set to 1 by default
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.