Bio::SearchIO::SearchWriterI - Interface for outputting parsed Search results
Bio::SearchIO::SearchWriterI objects cannot be instantiated since this module defines a pure interface.
Given an object that implements the Bio::SearchIO::SearchWriterI interface, you can do the following things with it:
print $writer->to_string( $result_obj, @args );
This module defines abstract methods that all subclasses must implement to be used for outputting results from Bio::Search::Result::ResultI objects.
Steve Chervitz <sac@bioperl.org>
This software is provided "as is" without warranty of any kind.
The rest of the documentation details each of the object methods.
Purpose : Produces data for each Search::Result::ResultI in a string. : This is an abstract method. For some useful implementations, : see ResultTableWriter.pm, HitTableWriter.pm, : and HSPTableWriter.pm. Usage : print $writer->to_string( $result_obj, @args ); Argument : $result_obj = A Bio::Search::Result::ResultI object : @args = any additional arguments used by your implementation. Returns : String containing data for each search Result or any of its : sub-objects (Hits and HSPs). Throws : n/a
To install Bio::Seq, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::Seq
CPAN shell
perl -MCPAN -e shell install Bio::Seq
For more information on module installation, please visit the detailed CPAN module installation guide.