Bio::DB::Flat::BDB - Interface for BioHackathon standard BDB-indexed flat file
You should not be using this module directly. See Bio::DB::Flat.
This object provides the basic mechanism to associate positions in files with primary and secondary name spaces. Unlike Bio::Index::Abstract (see Bio::Index::Abstract), this is specialized to work with the BerkeleyDB-indexed "common" flat file format worked out at the 2002 BioHackathon.
This object is the guts to the mechanism, which will be used by the specific objects inheriting from it.
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Bio::DB::Flat,
The rest of the documentation details each of the object methods. Internal methods are usually preceded with an "_" (underscore).
Title : get_PrimarySeq_stream Usage : $stream = get_PrimarySeq_stream Function: Makes a Bio::DB::SeqStreamI compliant object which provides a single method, next_primary_seq Returns : Bio::DB::SeqStreamI Args : none
Title : get_all_primary_ids Usage : @ids = $seqdb->get_all_primary_ids() Function: gives an array of all the primary_ids of the sequence objects in the database. Example : Returns : an array of strings Args : none
The following methods MUST be implemented by subclasses.
The following methods MAY be overridden by subclasses.
To install LocalConfig, copy and paste the appropriate command in to your terminal.
cpanm
cpanm LocalConfig
CPAN shell
perl -MCPAN -e shell install LocalConfig
For more information on module installation, please visit the detailed CPAN module installation guide.