Bio::SearchIO::chado - chado sequence input/output stream
It is probably best not to use this object directly, but rather go through the SearchIO handler system. Go:
$stream = Bio::SearchIO->new(-file => $filename, -format => 'chado'); while ( my $seq = $stream->next_seq() ) { # do something with $seq }
This object can transform Bio::Seq objects to and from chado flat file databases. CURRENTLY ONLY TO
(output only) shows the dna or not
(output only) provides a sorting func which is applied to the FTHelpers before printing
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion http://www.bioperl.org/MailList.shtml - About the mailing lists
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via email or the web:
bioperl-bugs@bio.perl.org http://bio.perl.org/bioperl-bugs/
Email cjm@fruitfly.org
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : write_result Usage : $stream->write_result($result) Function: writes the $result object (must be result) to the stream Returns : 1 for success and 0 for error Args : Bio::Result
To install LocalConfig, copy and paste the appropriate command in to your terminal.
cpanm
cpanm LocalConfig
CPAN shell
perl -MCPAN -e shell install LocalConfig
For more information on module installation, please visit the detailed CPAN module installation guide.